PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.086300.1
Common NameCsa_1G065960, LOC101208894
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 236aa    MW: 26322 Da    PI: 5.8458
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.086300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.41.7e-1080125654
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        E+ RRd++N++f eL ++l +    + +K +K++iL  Av+ I +L
  Cucsa.086300.1  80 ARKEKIRRDKLNDRFLELNSILNHG---RPPKIDKSAILGDAVRMIIQL 125
                     568*********************8...89****************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.39574125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.72E-877130No hitNo description
PfamPF000104.4E-879125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-680131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-1281148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-1082147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MGSPELTDWV FDYGVIENIP VPGGDLPSLD LPSFTLPSCD FTASFREDFD EPLGMEEDVK  60
ESRSRKRMSS GSSNAFESKA RKEKIRRDKL NDRFLELNSI LNHGRPPKID KSAILGDAVR  120
MIIQLRDEAQ KLKESNESSL EKINEMKAEK NELRDEKQRL KEAKDSLEKK MKGFNTQPTF  180
LPHPPAIPAG FSSPNQIVGG KLVPVIGYPG VSMWQFMPPG AIDTSQDHVL RPPVA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18087RKEKIRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819321e-136LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132661e-136LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004145091.11e-172PREDICTED: transcription factor ILR3-like
SwissprotQ9FH379e-75ILR3_ARATH; Transcription factor ILR3
TrEMBLA0A0A0LX711e-172A0A0A0LX71_CUCSA; Uncharacterized protein
STRINGPOPTR_0011s03360.19e-94(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16023486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.12e-72bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]